STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YcdF_1Short chain dehydrogenase. (282 aa)    
Predicted Functional Partners:
FabG_21
Short chain dehydrogenase/reductase SDR.
  
  
 
0.910
RMCT_2327
Short-chain dehydrogenase.
  
  
 
0.905
MenE_2
AMP-dependent synthetase and ligase.
  
 
 0.835
RMCT_2208
Putative uncharacterized protein.
       0.785
KasA_2
Fatty acid synthase.
  
 0.782
BetC
Hydrolase.
  
 
 0.753
YhjE_2
Major facilitator transporter.
       0.732
EchA8_30
enoyl-CoA hydratase.
  
 0.691
RMCT_1252
acyl-CoA dehydrogenase domain-containing protein.
  
  0.674
RMCT_2076
acyl-CoA dehydrogenase domain-containing protein.
  
  0.674
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.