Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YcdF_1Short chain dehydrogenase. (282 aa)    
Predicted Functional Partners:
FabG_21
Short chain dehydrogenase/reductase SDR.
  
  
 
0.910
RMCT_2327
Short-chain dehydrogenase.
  
  
 
0.905
MenE_2
AMP-dependent synthetase and ligase.
  
 
 0.824
RMCT_2208
Putative uncharacterized protein.
       0.784
YhjE_2
Major facilitator transporter.
     
 0.741
KasA_2
Fatty acid synthase.
  
 0.707
EchA8_30
enoyl-CoA hydratase.
  
 0.664
BetC
Hydrolase.
  
 
 0.639
FadJ
3-hydroxyacyl-CoA dehydrogenase.
 
 0.621
RMCT_1252
acyl-CoA dehydrogenase domain-containing protein.
  
  0.607
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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