STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2238TetR family transcriptional regulator. (225 aa)    
Predicted Functional Partners:
SubB_3
Ferredoxin.
 
     0.879
RMCT_2240
Cytochrome P450-SU2.
 
   
 0.855
RMCT_2241
Amidohydrolase.
 
     0.805
MenB_2
enoyl-CoA hydratase/carnithine racemase.
  
  
 0.782
RMCT_2243
Peptidase, M24 family protein.
     
 0.781
FabG_19
Dehydrogenase.
       0.627
RMCT_2242
Peptidase, M24 family protein.
     
 0.588
PknD
SMP-30/gluconolaconase/LRE domain-containing protein.
  
     0.580
Frc_12
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
    0.573
RMCT_2237
Lysophospholipase.
       0.559
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.