STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Frc_12L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (806 aa)    
Predicted Functional Partners:
MenB_2
enoyl-CoA hydratase/carnithine racemase.
 
 
 0.886
RMCT_2241
Amidohydrolase.
 
    0.872
RMCT_2242
Peptidase, M24 family protein.
 
     0.840
RMCT_2243
Peptidase, M24 family protein.
 
     0.840
SubB_3
Ferredoxin.
       0.677
RMCT_2240
Cytochrome P450-SU2.
       0.677
FabG_19
Dehydrogenase.
   
 0.647
FadD_15
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
     
 0.576
RMCT_2238
TetR family transcriptional regulator.
  
    0.573
RMCT_2246
Putative uncharacterized protein.
       0.531
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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