Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2267MobA-like protein. (191 aa)    
Predicted Functional Partners:
RMCT_2772
Xanthine dehydrogenase.
 
  
 0.900
CoxS_2
Carbon-monoxide dehydrogenase.
 
  
 0.794
CutM_2
Molybdopterin dehydrogenase FAD-binding protein.
 
  
 0.742
RMCT_2768
Hypothetical protein.
 
  
 0.708
CutM_1
Carbon monoxyde dehydrogenase medium subunit.
 
  
 0.706
CutL_2
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein.
 
   
 0.699
CoxS_1
Carbon-monoxide dehydrogenase.
 
  
 0.693
CutL_1
Carbon monoxyde dehydrogenase large subunit.
 
   
 0.600
RMCT_2266
Anti-sigma-factor antagonist.
       0.451
RMCT_4231
Peptidase M23B.
  
    0.446
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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