Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2291Protein of unknown function. (77 aa)    
Predicted Functional Partners:
RMCT_3333
Conserved membrane protein.
   
    0.688
RMCT_2290
Exonuclease I.
       0.661
ManA
Mannose-6-phosphate isomerase manA.
     
 0.661
PmmA
Phosphomannomutase/phosphoglucomutase.
       0.640
RMCT_2293
TobH protein.
       0.640
FbpC_2
Esterase.
   
  
 0.629
FbpA_2
Secreted antigen 85-A FbpA.
   
  
 0.508
whiB-4
Transcriptional regulatory protein whib-like whiB2; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
    0.489
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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