Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AlkGRubredoxin; Belongs to the rubredoxin family. (55 aa)    
Predicted Functional Partners:
AlkB1
Transmembrane alkane 1-monooxygenase AlkB.
 
  
 0.966
ThcD
Ferredoxin reductase.
  
 
 0.860
AlkB
Alkane 1-monooxygenase.
 
  
 0.853
RMCT_2300
TetR family transcriptional regulator.
       0.681
RubA
Rubredoxin RubB.
 
    
0.642
AroP
Cationic amino acid transporter.
     
 0.577
RMCT_0721
Hydrogenase small subunit.
  
 
 0.533
HydA
NADH ubiquinone oxidoreductase, 20 kDa subunit.
  
 
 0.533
ahcY
S-adenosyl-L-homocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
       0.519
RMCT_2302
Secretory lipase.
  
  
 0.502
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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