Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DnaK_4 | RMCT_2304 | RMCT_3799 | RMCT_2304 | Molecular chaperone-like protein. | TPR repeat protein. | 0.724 |
DnaK_4 | RMCT_3586 | RMCT_3799 | RMCT_3586 | Molecular chaperone-like protein. | Immunogenic protein MPB64/MPT64. | 0.435 |
DnaK_4 | rpoA | RMCT_3799 | RMCT_0527 | Molecular chaperone-like protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.515 |
DnaK_4 | rpoB | RMCT_3799 | RMCT_2930 | Molecular chaperone-like protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.467 |
RMCT_0539 | RMCT_2304 | RMCT_0539 | RMCT_2304 | Putative uncharacterized protein. | TPR repeat protein. | 0.724 |
RMCT_0539 | rpoA | RMCT_0539 | RMCT_0527 | Putative uncharacterized protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.515 |
RMCT_0539 | rpoB | RMCT_0539 | RMCT_2930 | Putative uncharacterized protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.467 |
RMCT_2304 | DnaK_4 | RMCT_2304 | RMCT_3799 | TPR repeat protein. | Molecular chaperone-like protein. | 0.724 |
RMCT_2304 | RMCT_0539 | RMCT_2304 | RMCT_0539 | TPR repeat protein. | Putative uncharacterized protein. | 0.724 |
RMCT_2304 | RMCT_2305 | RMCT_2304 | RMCT_2305 | TPR repeat protein. | Putative uncharacterized protein. | 0.773 |
RMCT_2304 | RMCT_3163 | RMCT_2304 | RMCT_3163 | TPR repeat protein. | Putative uncharacterized protein. | 0.731 |
RMCT_2304 | RMCT_3586 | RMCT_2304 | RMCT_3586 | TPR repeat protein. | Immunogenic protein MPB64/MPT64. | 0.731 |
RMCT_2304 | RMCT_4575 | RMCT_2304 | RMCT_4575 | TPR repeat protein. | Putative uncharacterized protein. | 0.731 |
RMCT_2304 | alaS | RMCT_2304 | RMCT_3686 | TPR repeat protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.756 |
RMCT_2304 | rpoA | RMCT_2304 | RMCT_0527 | TPR repeat protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.747 |
RMCT_2304 | rpoB | RMCT_2304 | RMCT_2930 | TPR repeat protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.745 |
RMCT_2304 | rpoZ | RMCT_2304 | RMCT_3654 | TPR repeat protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.728 |
RMCT_2305 | RMCT_2304 | RMCT_2305 | RMCT_2304 | Putative uncharacterized protein. | TPR repeat protein. | 0.773 |
RMCT_3163 | RMCT_2304 | RMCT_3163 | RMCT_2304 | Putative uncharacterized protein. | TPR repeat protein. | 0.731 |
RMCT_3163 | alaS | RMCT_3163 | RMCT_3686 | Putative uncharacterized protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.880 |
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