Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2345Protein of unknown function. (104 aa)    
Predicted Functional Partners:
QcrC
Ubiquinol-cytochrome C reductase qcrC.
  
     0.732
CtaF
Integral membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.667
RMCT_3902
Transmembrane protein.
  
     0.622
RMCT_3877
Rieske iron-sulfur protein qcrA.
  
     0.621
RMCT_2344
MmpS3 protein.
       0.600
RMCT_0686
Alanine rich membrane protein.
  
     0.565
RMCT_3888
Cyclase/dehydrase.
  
   
 0.526
QcrB
Ubiquinol-cytochrome c reductase cytochrome b subunit.
 
     0.514
RMCT_2598
Transmembrane protein.
  
     0.466
RMCT_3016
Oxpp cycle protein opcA.
  
     0.455
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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