Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2365Major facilitator superfamily MFS_1. (435 aa)    
Predicted Functional Partners:
RMCT_4559
Stage II sporulation protein E.
  
  
 0.587
FbpA_1
ABC transporter ferric iron-binding periplasmic protein.
  
  
 0.563
CaiB
CaiB/baiF CoA-transferase family protein; Belongs to the CoA-transferase III family.
     
 0.540
RMCT_2367
Cytochrome P450.
       0.488
AqpZ2
Glycerol uptake facilitator; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
  
 0.447
RMCT_1682
XRE family transcriptional regulator.
 
    0.415
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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