Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2370Acyl dehydratase. (150 aa)    
Predicted Functional Partners:
RMCT_2373
Putative uncharacterized protein.
 
 
 0.980
RMCT_2372
Putative uncharacterized protein.
 
 0.968
RMCT_2369
Lipid-transfer protein.
 
 
 0.966
RMCT_2374
isovaleryl-CoA dehydrogenase.
 
 0.954
CaiA_2
Short/branched chain specific acyl-CoA dehydrogenase.
 
 0.939
RMCT_1950
Nucleic acid-binding protein.
 
 0.921
RMCT_1951
acyl-CoA dehydrogenase fadE29.
 
 0.878
FadE26
acyl-CoA dehydrogenase fadE26.
 
 0.869
RMCT_1932
Lipid-transfer protein.
 
 
 0.865
RMCT_1931
DNA-binding protein.
 
 
 0.857
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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