Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
UgpC_1ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (360 aa)    
Predicted Functional Partners:
YcjP_1
Sugar ABC transporter permease.
 
 0.998
YcjO_1
Sugar ABC transporter permease.
 
 0.998
RMCT_2446
Sugar ABC transporter periplasmic protein.
 
 0.996
YcjO_2
Sugar-transport integral membrane protein ABC transporter sugA.
 
 
 0.991
LpqY
Lipoprotein (sugar-binding) lpqY.
 
 0.991
YcjP_2
Sugar-transport integral membrane protein ABC transporter sugB.
 
 
 0.987
UgpC_2
Sugar-transport ATP-binding protein ABC transporter sugC; Belongs to the ABC transporter superfamily.
  
  
 
0.905
DeoR
Transcriptional regulator with sigma factor-related N-terminal domain.
     
 0.741
MetN2
ABC transporter-like protein.
   
0.690
Por
Mannitol 2-dehydrogenase.
  
  
 0.642
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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