STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YcjO_1Sugar ABC transporter permease. (324 aa)    
Predicted Functional Partners:
UgpC_1
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.998
YcjP_1
Sugar ABC transporter permease.
 0.998
RMCT_2446
Sugar ABC transporter periplasmic protein.
 
 0.998
UgpC_2
Sugar-transport ATP-binding protein ABC transporter sugC; Belongs to the ABC transporter superfamily.
 
 0.994
YcjP_2
Sugar-transport integral membrane protein ABC transporter sugB.
 
 0.957
LpqY
Lipoprotein (sugar-binding) lpqY.
 
 0.916
DeoR
Transcriptional regulator with sigma factor-related N-terminal domain.
 
   
 0.888
Por
Mannitol 2-dehydrogenase.
 
  
 0.808
XylB_3
Xylulokinase; Belongs to the FGGY kinase family.
 
  
 0.753
GutB_1
Theronine dehydrogenase-like Zn-dependent dehydrogenase.
 
   
 0.708
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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