STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SodC_2Copper/zinc binding superoxide dismutase. (294 aa)    
Predicted Functional Partners:
CopZ
Heavy metal transport/detoxification protein.
  
 0.920
QcrB
Ubiquinol-cytochrome c reductase cytochrome b subunit.
    
 
 0.894
RMCT_3877
Rieske iron-sulfur protein qcrA.
   
 
 0.892
RMCT_3336
LpqE protein.
   
   0.883
RMCT_4258
Protein of unknown function.
    
   0.883
sodB
Superoxide dismutase Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.803
CtaC
Transmembrane cytochrome C oxidase subunit II ctaC.
    
 
 0.765
CtaF
Integral membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
    
   0.747
QcrC
Ubiquinol-cytochrome C reductase qcrC.
   
   0.747
YfkM
Intracellular protease, PfpI family.
 
 
 0.708
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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