STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LptB_1ABC transporter ATP-binding protein. (646 aa)    
Predicted Functional Partners:
Kgd
Alpha-ketoglutarate decarboxylase.
   
 
 0.955
PknB_1
Transmembrane serine/threonine-protein kinase B pknB.
  
 
 0.909
RMCT_4559
Stage II sporulation protein E.
  
 0.843
CtpF_2
Metal cation transporter P-type ATPase ctpE.
  
 0.720
YloB_1
P-type HAD superfamily ATPase.
  
 0.720
YloB_2
P-type HAD superfamily ATPase.
  
 0.720
CtpF_1
ATPase, P-type (transporting), HAD superfamily, subfamily IC.
  
 0.720
RMCT_0418
Cutinase.
  
 0.707
RMCT_0530
Cutinase cut2; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle.
  
 0.707
RMCT_1417
Cutinase; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle.
  
 0.707
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.