Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
YtnP_1Beta-lactamase. (304 aa)    
Predicted Functional Partners:
RMCT_2548
Cytochrome P450.
     
 0.563
FccB
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
   
 0.548
BedA
NAD(FAD)-dependent dehydrogenase.
   
 0.548
RutA_2
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase.
     
 0.520
HapE_1
Fad-dependent monooxygenase.
     
 0.459
RMCT_4462
Major facilitator transporter.
 
  
 0.453
RMCT_0820
Isochorismatase hydrolase.
 
 
 0.452
MoeZ
Molybdopterin biosynthesis-like protein MoeZ.
  
 
 0.442
BaeB_3
Beta-lactamase domain-containing protein.
  
 
 0.435
YgaP
Rhodanese domain-containing protein.
  
 
 0.435
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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