Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2566Membrane protein. (183 aa)    
Predicted Functional Partners:
RMCT_2567
Putative Mce family protein.
 
   
 0.933
RMCT_2570
Mce family protein, Mce5C.
 
    0.933
RMCT_2569
Putative Mce family protein.
 
  
 0.932
RMCT_2568
Mce family protein, Mce5E.
 
    0.930
RMCT_2571
Mce family protein, Mce5B.
 
  
 0.903
RMCT_2572
Putative Mce family protein.
 
    0.885
MlaE_7
ABC transporter permease.
 
  
 0.841
MlaE_8
ABC transporter permease.
 
  
 0.833
Pks2
Polyketide synthase pks5.
  
 0.790
RMCT_2565
Conserved secreted protein.
       0.754
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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