Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MlaE_8ABC transporter permease. (284 aa)    
Predicted Functional Partners:
RMCT_2931
ABC transporter ATP-binding protein.
 
 0.984
RMCT_2571
Mce family protein, Mce5B.
 
 
 0.967
RMCT_2572
Putative Mce family protein.
 
 
 0.956
RMCT_2568
Mce family protein, Mce5E.
 
 
 0.955
RMCT_2570
Mce family protein, Mce5C.
 
 
 0.953
RMCT_2567
Putative Mce family protein.
 
 
 0.951
RMCT_2569
Putative Mce family protein.
 
 
 0.951
MlaE_7
ABC transporter permease.
 
 
0.950
RMCT_1911
MCE-family protein mce4D.
 
 
 0.863
Mce4B_2
MCE-family protein mce4B.
 
 
 0.863
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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