Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2628Hypothetical protein. (291 aa)    
Predicted Functional Partners:
RMCT_2629
Sugar phosphate isomerase/epimerase.
  
    0.913
RMCT_2630
Putative uncharacterized protein.
 
     0.831
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.830
GppA_1
Exopolyphosphatase.
  
    0.761
RMCT_4008
Secreted protein.
  
   
 0.659
RMCT_0809
Hypothetical protein.
 
   
 0.642
RMCT_2632
Hypothetical protein.
       0.642
RMCT_0576
Putative uncharacterized protein.
  
     0.636
RMCT_0937
Hypothetical protein.
  
     0.621
KatA
Catalase.
  
 0.620
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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