Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2713Conserved protein of unknown function. (520 aa)    
Predicted Functional Partners:
RMCT_1890
Hypothetical protein.
 
   
 0.692
RMCT_0706
LGFP repeat-containing protein.
 
    0.656
RMCT_1215
Protein of unknown function DUF222/HNH endonuclease.
  
  
 0.620
RMCT_3586
Immunogenic protein MPB64/MPT64.
 
    0.617
RMCT_1927
Hypothetical protein.
 
     0.613
RMCT_3075
Conserved alanine and proline rich protein.
 
     0.605
RMCT_2058
Virulence factor Mce family protein.
 
     0.579
RMCT_2557
Virulence factor Mce family protein.
 
     0.578
RMCT_2060
Virulence factor Mce family protein.
 
     0.567
YnaI
Small-conductance mechanosensitive channel.
 
   
 0.561
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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