Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AroP | DedA | RMCT_2296 | RMCT_2764 | Cationic amino acid transporter. | Transmembrane protein. | 0.495 |
| DedA | AroP | RMCT_2764 | RMCT_2296 | Transmembrane protein. | Cationic amino acid transporter. | 0.495 |
| DedA | HslR | RMCT_2764 | RMCT_0243 | Transmembrane protein. | Ribosome-associated heat shock protein Hsp15. | 0.417 |
| DedA | Hup | RMCT_2764 | RMCT_3531 | Transmembrane protein. | Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.467 |
| DedA | RMCT_0198 | RMCT_2764 | RMCT_0198 | Transmembrane protein. | RDD domain-containing protein. | 0.414 |
| DedA | RMCT_2763 | RMCT_2764 | RMCT_2763 | Transmembrane protein. | Hypothetical protein. | 0.578 |
| DedA | RMCT_3332 | RMCT_2764 | RMCT_3332 | Transmembrane protein. | Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. | 0.401 |
| DedA | Stp_2 | RMCT_2764 | RMCT_4282 | Transmembrane protein. | Arabinose efflux permease family protein. | 0.512 |
| DedA | Stp_3 | RMCT_2764 | RMCT_2815 | Transmembrane protein. | EmrB/QacA subfamily drug resistance transporter; Belongs to the major facilitator superfamily. | 0.450 |
| DedA | clpB | RMCT_2764 | RMCT_4012 | Transmembrane protein. | Endopeptidase ATP binding protein subunit B clpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. | 0.475 |
| DedA | topA | RMCT_2764 | RMCT_0139 | Transmembrane protein. | DNA topoisomerase I topA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA [...] | 0.514 |
| HslR | DedA | RMCT_0243 | RMCT_2764 | Ribosome-associated heat shock protein Hsp15. | Transmembrane protein. | 0.417 |
| HslR | Hup | RMCT_0243 | RMCT_3531 | Ribosome-associated heat shock protein Hsp15. | Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.433 |
| HslR | RMCT_0198 | RMCT_0243 | RMCT_0198 | Ribosome-associated heat shock protein Hsp15. | RDD domain-containing protein. | 0.754 |
| HslR | clpB | RMCT_0243 | RMCT_4012 | Ribosome-associated heat shock protein Hsp15. | Endopeptidase ATP binding protein subunit B clpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. | 0.802 |
| Hup | DedA | RMCT_3531 | RMCT_2764 | Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Transmembrane protein. | 0.467 |
| Hup | HslR | RMCT_3531 | RMCT_0243 | Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Ribosome-associated heat shock protein Hsp15. | 0.433 |
| Hup | topA | RMCT_3531 | RMCT_0139 | Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | DNA topoisomerase I topA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA [...] | 0.590 |
| RMCT_0198 | DedA | RMCT_0198 | RMCT_2764 | RDD domain-containing protein. | Transmembrane protein. | 0.414 |
| RMCT_0198 | HslR | RMCT_0198 | RMCT_0243 | RDD domain-containing protein. | Ribosome-associated heat shock protein Hsp15. | 0.754 |
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