Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2765VWA containing CoxE-like protein. (400 aa)    
Predicted Functional Partners:
RMCT_2767
Oxidoreductase.
 
     0.963
RMCT_2768
Hypothetical protein.
 
     0.959
RMCT_2766
Oxidoreductase.
 
     0.951
CutM_1
Carbon monoxyde dehydrogenase medium subunit.
 
     0.947
CutL_1
Carbon monoxyde dehydrogenase large subunit.
 
   
 0.930
CysL
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.831
RMCT_2772
Xanthine dehydrogenase.
 
     0.829
RMCT_3992
Glycoside hydrolase, family 76.
     
 0.799
CoxS_1
Carbon-monoxide dehydrogenase.
 
   
 0.784
RMCT_1897
Carbon monoxide dehydrogenase subunit G.
 
     0.779
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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