Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
AccA1_1Urea amidolyase. (1206 aa)    
Predicted Functional Partners:
GatA_2
Allophanate hydrolase.
  
 0.999
KipI
Allophanate hydrolase subunit 1.
  
 0.985
AccD3
acetyl-CoA carboxylase carboxyl transferase beta subunit accD3.
 
 
 0.976
RMCT_2793
Urea carboxylase-associated protein 1.
 
   
 0.974
RMCT_4109
Urea amidolyase related protein.
  
 
 0.973
RMCT_1312
propionyl-CoA carboxylase.
 
 0.971
RMCT_2794
Urea carboxylase-associated protein 2.
 
   
 0.968
RMCT_0924
acetyl-/propionyl-CoA carboxylase beta subunit accD1.
  
 0.966
AccD5_1
propionyl-CoA carboxylase beta subunit 5 accD5.
  
 0.966
RMCT_2817
Hypothetical protein.
  
  
 0.966
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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