Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CpnA_3 | Cyp123B1 | RMCT_2800 | RMCT_2799 | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Cytochrome P450. | 0.701 |
CpnA_3 | LolD | RMCT_2800 | RMCT_2801 | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | ABC transporter ATP-binding protein. | 0.775 |
CpnA_3 | RMCT_2802 | RMCT_2800 | RMCT_2802 | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | ABC transporter transmembrane protein. | 0.784 |
Cyp123B1 | CpnA_3 | RMCT_2799 | RMCT_2800 | Cytochrome P450. | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.701 |
Cyp123B1 | LolD | RMCT_2799 | RMCT_2801 | Cytochrome P450. | ABC transporter ATP-binding protein. | 0.693 |
Cyp123B1 | RMCT_2802 | RMCT_2799 | RMCT_2802 | Cytochrome P450. | ABC transporter transmembrane protein. | 0.693 |
GsiA_2 | LolD | RMCT_4514 | RMCT_2801 | ABC transporter--like protein. | ABC transporter ATP-binding protein. | 0.725 |
LolD | CpnA_3 | RMCT_2801 | RMCT_2800 | ABC transporter ATP-binding protein. | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.775 |
LolD | Cyp123B1 | RMCT_2801 | RMCT_2799 | ABC transporter ATP-binding protein. | Cytochrome P450. | 0.693 |
LolD | GsiA_2 | RMCT_2801 | RMCT_4514 | ABC transporter ATP-binding protein. | ABC transporter--like protein. | 0.725 |
LolD | RMCT_0003 | RMCT_2801 | RMCT_0003 | ABC transporter ATP-binding protein. | Putative uncharacterized protein. | 0.675 |
LolD | RMCT_1659 | RMCT_2801 | RMCT_1659 | ABC transporter ATP-binding protein. | Uncharacterized protein. | 0.675 |
LolD | RMCT_2802 | RMCT_2801 | RMCT_2802 | ABC transporter ATP-binding protein. | ABC transporter transmembrane protein. | 0.995 |
LolD | RMCT_3018 | RMCT_2801 | RMCT_3018 | ABC transporter ATP-binding protein. | Conserved protein of unknown function. | 0.675 |
LolD | pheS | RMCT_2801 | RMCT_4493 | ABC transporter ATP-binding protein. | phenylalanyl-tRNA synthetase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.715 |
LolD | rpsE | RMCT_2801 | RMCT_0500 | ABC transporter ATP-binding protein. | 30S ribosomal protein S5 rpsE; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.662 |
LolD | tsaD | RMCT_2801 | RMCT_0564 | ABC transporter ATP-binding protein. | O-sialoglycoprotein endopeptidase gcp; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.665 |
RMCT_0003 | LolD | RMCT_0003 | RMCT_2801 | Putative uncharacterized protein. | ABC transporter ATP-binding protein. | 0.675 |
RMCT_1659 | LolD | RMCT_1659 | RMCT_2801 | Uncharacterized protein. | ABC transporter ATP-binding protein. | 0.675 |
RMCT_2802 | CpnA_3 | RMCT_2802 | RMCT_2800 | ABC transporter transmembrane protein. | Short-chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.784 |
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