Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AdrA | HrdB | RMCT_3166 | RMCT_0697 | Diguanylate cyclase. | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.432 |
| AdrA | RpoE_3 | RMCT_3166 | RMCT_2838 | Diguanylate cyclase. | RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.478 |
| DegP | HrdB | RMCT_2836 | RMCT_0697 | Trypsin-like serine protease with C-terminal PDZ domain. | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.441 |
| DegP | RMCT_2837 | RMCT_2836 | RMCT_2837 | Trypsin-like serine protease with C-terminal PDZ domain. | RNA polymerase sigma-70 factor. | 0.678 |
| DegP | RpoE_3 | RMCT_2836 | RMCT_2838 | Trypsin-like serine protease with C-terminal PDZ domain. | RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.486 |
| DegP | tatB | RMCT_2836 | RMCT_2835 | Trypsin-like serine protease with C-terminal PDZ domain. | Sec-independent translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.952 |
| HrdB | AdrA | RMCT_0697 | RMCT_3166 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Diguanylate cyclase. | 0.432 |
| HrdB | DegP | RMCT_0697 | RMCT_2836 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Trypsin-like serine protease with C-terminal PDZ domain. | 0.441 |
| HrdB | RpoE_3 | RMCT_0697 | RMCT_2838 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.651 |
| HrdB | SigE | RMCT_0697 | RMCT_0577 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily. | 0.505 |
| HrdB | rpoA | RMCT_0697 | RMCT_0527 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.978 |
| PtrA | RpoE_3 | RMCT_4311 | RMCT_2838 | Zinc protease pepR; Belongs to the peptidase M16 family. | RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.510 |
| RMCT_2330 | RpoE_3 | RMCT_2330 | RMCT_2838 | Anti-sigma factor. | RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.607 |
| RMCT_2330 | SigE | RMCT_2330 | RMCT_0577 | Anti-sigma factor. | ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily. | 0.707 |
| RMCT_2330 | tatB | RMCT_2330 | RMCT_2835 | Anti-sigma factor. | Sec-independent translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.426 |
| RMCT_2837 | DegP | RMCT_2837 | RMCT_2836 | RNA polymerase sigma-70 factor. | Trypsin-like serine protease with C-terminal PDZ domain. | 0.678 |
| RMCT_2837 | RMCT_2839 | RMCT_2837 | RMCT_2839 | RNA polymerase sigma-70 factor. | Methyltransferase. | 0.403 |
| RMCT_2837 | RpoE_3 | RMCT_2837 | RMCT_2838 | RNA polymerase sigma-70 factor. | RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.799 |
| RMCT_2837 | SigE | RMCT_2837 | RMCT_0577 | RNA polymerase sigma-70 factor. | ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily. | 0.583 |
| RMCT_2837 | tatB | RMCT_2837 | RMCT_2835 | RNA polymerase sigma-70 factor. | Sec-independent translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.940 |
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