Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LimB_5Flavin-dependent oxidoreductase. (293 aa)    
Predicted Functional Partners:
RutA_3
Luciferase family protein.
  
     0.728
RMCT_1224
Luciferase-like protein.
  
     0.700
RMCT_0861
Hybride transferase/ F420-dependent dehydrogenase.
  
     0.683
RMCT_0249
Luciferase family protein.
  
     0.669
RMCT_4121
F420-dependent oxidoreductase, MSMEG_4879 family.
  
     0.668
LimB_4
Luciferase family protein.
  
     0.591
LuxA_4
Luciferase family protein.
  
     0.537
RMCT_2673
Putative uncharacterized protein.
  
     0.502
Fgd1_6
Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase.
  
     0.472
RMCT_2287
F420-0--gamma-glutamyl ligase.
 
  
 0.470
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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