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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2874Transposase for insertion sequence element IS5376. (453 aa)    
Predicted Functional Partners:
RMCT_2873
Transposition helper protein.
 
  
 0.960
DnaA_2
IstB domain-containing protein ATP-binding protein.
 
  
 0.831
DnaA_4
IstB domain-containing protein ATP-binding protein.
 
  
 0.830
DnaA_3
IstB domain-containing protein ATP-binding protein.
 
  
 0.829
RMCT_4712
Transposase.
  
     0.765
RMCT_4713
Transposase.
  
     0.742
RMCT_4697
Transposase.
  
     0.436
RMCT_2875
DNA/RNA helicase.
       0.434
DpnA
DNA methylase N-4/N-6 domain-containing protein.
       0.402
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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