Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lvr_4Short chain dehydrogenase. (264 aa)    
Predicted Functional Partners:
RMCT_2889
acyl-CoA dehydrogenase.
 
  0.997
CaiD_11
enoyl-CoA hydratase.
 
 0.991
RMCT_2893
acyl-CoA dehydrogenase fadE33.
 
  0.990
PcaF_5
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.987
RMCT_1964
Oxidoreductase.
 
 
 0.983
FadD_18
acyl-CoA synthetase.
 
 0.981
CaiA_8
acyl-CoA dehydrogenase.
 
  0.971
KasA_2
Fatty acid synthase.
  
 0.969
FadD_12
acyl-CoA synthetase.
 
 0.955
PaaJ
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.949
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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