Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
YhjE_3General substrate transporter. (448 aa)    
Predicted Functional Partners:
BdhA_4
3-hydroxybutyrate dehydrogenase.
 
   
 0.861
MdlB
L-lactate dehydrogenase (cytochrome) lldD2.
  
  
 0.815
LldD
L-lactate dehydrogenase (cytochrome) lldD1.
  
  
 0.815
HsaC
Biphenyl-2,3-diol-1,2-dioxygenase bphC.
     
 0.604
HsaB_2
Oxidoreductase.
     
 0.594
HsaD_3
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase bphD.
     
 0.594
HsaA_5
Oxidoreductase.
       0.562
RMCT_4229
Lactate 2-monooxygenase.
  
  
 0.510
Hmp_6
Hemoglobine-related protein hmp.
     
 0.451
RMCT_0547
Putative uncharacterized protein.
  
 
 0.420
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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