STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HsaCBiphenyl-2,3-diol-1,2-dioxygenase bphC. (300 aa)    
Predicted Functional Partners:
HsaB_2
Oxidoreductase.
 
 
 0.999
HsaD_3
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase bphD.
 
 
 0.999
HsaA_5
Oxidoreductase.
 
 
 0.999
HsaA_1
Hydroxylase.
 
 
 0.986
HsaA_3
acyl-CoA dehydrogenase.
 
 
 0.957
BphC
Extradiol dioxygenase, type I.
 
 
0.921
KshA_8
Rieske (2Fe-2S) domain-containing protein.
 
   
 0.903
KsdD
3-ketosteroid-delta-1-dehydrogenase.
 
 
 0.889
C2-hpah
acyl-CoA dehydrogenase type 2.
 
  
 0.862
KshA_4
Iron-sulfur binding oxidoreductase.
 
   
 0.855
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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