STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HsaD_32-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase bphD. (304 aa)    
Predicted Functional Partners:
HsaC
Biphenyl-2,3-diol-1,2-dioxygenase bphC.
 
 
 0.999
HsaA_5
Oxidoreductase.
 
 
 0.996
HsaB_2
Oxidoreductase.
 
  
 0.979
BphC
Extradiol dioxygenase, type I.
 
 
 0.973
FadD_18
acyl-CoA synthetase.
 
 
 0.935
FadD_12
acyl-CoA synthetase.
   
 0.926
KshA_8
Rieske (2Fe-2S) domain-containing protein.
 
 
 
 0.823
C2-hpah
acyl-CoA dehydrogenase type 2.
 
 
 0.757
HsaA_1
Hydroxylase.
 
 
 0.735
BphI
4-hydroxy-2-ketovalerate aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family.
 
  
 0.731
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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