Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2919Putative uncharacterized protein. (186 aa)    
Predicted Functional Partners:
RMCT_1387
Lipoprotein lprB.
 
  
 0.936
RMCT_2918
Putative uncharacterized protein.
       0.784
RMCT_1140
Putative uncharacterized protein.
  
     0.749
RMCT_0183
Putative uncharacterized protein.
  
     0.721
RMCT_3485
Hypothetical protein.
  
     0.712
RMCT_2268
Putative uncharacterized protein.
 
    0.711
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
   0.636
RMCT_3477
Copper resistance D domain-containing protein.
  
     0.630
RMCT_3730
Extracellular solute-binding protein.
 
   
 0.627
RMCT_0113
Protease.
  
     0.621
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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