Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
PaaXPhenylacetic acid-responsive transcriptional repressor. (240 aa)    
Predicted Functional Partners:
CaiD_3
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.855
FadE8
acyl-CoA dehydrogenase.
  
    0.832
YybR
HxlR family transcriptional regulator.
   
  
 0.694
EthR_1
Transcriptional regulator.
   
    0.691
RMCT_3099
Transcriptional regulator.
   
    0.691
cobB-2
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
   
    0.688
RMCT_0634
RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family.
   
    0.676
EthR_2
TetR family transcriptional regulator.
   
    0.675
Nfo
Endonuclease IV.
       0.655
GerE
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
   
    0.653
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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