Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
UbiB_1Bbc-1. (451 aa)    
Predicted Functional Partners:
BpoC_2
Lipase/esterase lipG.
  
  
 0.972
PcpB_1
Oxygenase.
 
 0.687
UbiF_2
Putative uncharacterized protein.
 
 0.684
UbiF_1
FAD-dependent oxidoreductase.
 
 0.679
TfdB
Aromatic ring hydroxylase.
  
 0.637
RMCT_1612
Putative uncharacterized protein.
  
 0.637
RMCT_1982
Putative uncharacterized protein.
  
 0.637
mhpA
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase; Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).
  
 0.637
TcmG
Putative monooxygenase.
  
 0.637
PcpB_2
FAD-dependent oxidoreductase.
  
 0.637
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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