STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PknH_2Putative uncharacterized protein. (544 aa)    
Predicted Functional Partners:
PstP
Serine/threonine phosphatase ppp.
 
 
 0.894
LpqM
Lipoprotein peptidase.
     
 0.747
RMCT_0377
FHA domain-containing protein.
 
 
 
 0.746
RMCT_1095
FHA domain-containing protein.
 
 
 
 0.585
PknB_1
Transmembrane serine/threonine-protein kinase B pknB.
 
 
0.555
RMCT_4559
Stage II sporulation protein E.
  
 
 0.535
YmdB
Appr-1-p processing domain-containing protein.
     
 0.523
RMCT_1094
FHA domain-containing protein.
 
 
 
 0.514
PknG
Serine/threonine-protein kinase pknG.
  
   
0.447
ArtM_2
ABC transporter ATP-binding protein.
  
 
 0.435
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.