Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
RMCT_3045Homogentisate 1,2-dioxygenase. (371 aa)    
Predicted Functional Partners:
RMCT_1828
Homogentisate 1,2-dioxygenase.
  
  
 
0.928
RMCT_3044
Alpha/beta hydrolase fold protein.
 
     0.904
EthR_2
TetR family transcriptional regulator.
 
     0.870
YngG_1
hydroxymethylglutaryl-CoA lyase.
 
   
 0.864
Frc_5
formyl-CoA transferase; Belongs to the CoA-transferase III family.
  
    0.803
RMCT_3040
acyl-CoA dehydrogenase.
  
  
 0.700
RMCT_3039
Aminoglycoside phosphotransferase.
 
     0.695
HsaA_3
acyl-CoA dehydrogenase.
 
  
 0.655
RMCT_3038
Ketosteroid isomerase-like protein.
       0.643
RMCT_3037
Response regulator.
       0.542
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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