Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YvdT_1TetR family transcriptional regulator. (194 aa)    
Predicted Functional Partners:
RMCT_2560
AraC family transcriptional regulator.
 
  
 0.675
YybR
HxlR family transcriptional regulator.
 
  
 0.612
EthR_1
Transcriptional regulator.
  
  
 0.569
RMCT_0634
RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family.
  
  
 0.568
CysL
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
 
 0.565
FbpB
Antigen 85-C.
     
 0.563
RMCT_1755
TetR family transcriptional regulator.
  
  
 0.562
FecI
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family.
  
  
 0.560
IdeR_1
Transcriptional repressor sirR.
  
  
 0.549
GerE
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
  
 0.530
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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