STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YjiRGntR family transcriptional regulator. (128 aa)    
Predicted Functional Partners:
IcaR
TetR family transcriptional regulator.
   
  
 0.787
cobB-2
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
    0.761
EthR_1
Transcriptional regulator.
  
  
 0.721
YybR
HxlR family transcriptional regulator.
  
    0.709
RMCT_1134
Hypothetical protein; Belongs to the UPF0301 (AlgH) family.
  
    0.693
IdeR_1
Transcriptional repressor sirR.
  
    0.662
RMCT_3099
Transcriptional regulator.
  
  
 0.622
Fur
Ferric uptake regulation protein furB; Belongs to the Fur family.
  
  
 0.621
PrrA
Two component transcriptional regulator.
   
  
 0.616
RMCT_2435
TetR family transcriptional regulator.
   
  
 0.616
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.