Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RMCT_3139Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (289 aa)    
Predicted Functional Partners:
EthR_3
TetR family transcriptional regulator.
 
   
 0.821
YcdF_2
Dehydrogenase.
 
 
 
 0.770
FabG_26
Dehydrogenase.
 
 
 
 0.757
YcdF_4
Short-chain dehydrogenase/reductase SDR.
 
 
 
 0.673
RMCT_4647
Short-chain dehydrogenase/reductase SDR.
 
 
 
 0.664
HdhA_1
Short chain dehydrogenase.
 
 
 
 0.657
RMCT_1887
Short-chain dehydrogenase/reductase SDR.
 
 
 
 0.652
RMCT_3141
Cytochrome P450 CYP136.
  
 
 0.609
RMCT_1651
Short-chain alcohol dehydrogenase.
 
   
 0.567
PpsA_2
Beta-ketoacyl synthase.
  
 
 0.533
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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