Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RMCT_3155Integral membrane protein. (584 aa)    
Predicted Functional Partners:
RMCT_3153
Antibiotic ABC transporter membrane protein.
 
  
 0.878
DrrA_2
ABC transporter ATP-binding protein.
  
 
 0.837
CtaA
Antibiotic ABC transporter membrane protein.
 
   
 0.792
RMCT_3156
Transcriptional regulator.
 
     0.773
RMCT_4662
Transmembrane protein.
 
  
 0.744
SufD
FeS assembly protein SufD.
     
 0.733
YurY
FeS assembly ATPase SufC.
     
 0.731
SufS
Cysteine desulfurase csd; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
     
 0.729
RMCT_0550
Hypothetical protein.
 
     0.725
RMCT_2544
Transmembrane protein.
  
     0.711
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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