Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NifU | RMCT_0010 | RMCT_3161 | RMCT_0010 | Nitrogen fixation-like protein. | Aminotransferase. | 0.958 |
NifU | RMCT_3153 | RMCT_3161 | RMCT_3153 | Nitrogen fixation-like protein. | Antibiotic ABC transporter membrane protein. | 0.705 |
NifU | RMCT_3155 | RMCT_3161 | RMCT_3155 | Nitrogen fixation-like protein. | Integral membrane protein. | 0.764 |
NifU | RMCT_3156 | RMCT_3161 | RMCT_3156 | Nitrogen fixation-like protein. | Transcriptional regulator. | 0.916 |
NifU | RMCT_3157 | RMCT_3161 | RMCT_3157 | Nitrogen fixation-like protein. | FeS assembly protein SufB. | 0.985 |
NifU | RMCT_3162 | RMCT_3161 | RMCT_3162 | Nitrogen fixation-like protein. | Metal-sulfur cluster biosynthetic protein. | 0.992 |
NifU | SufD | RMCT_3161 | RMCT_3158 | Nitrogen fixation-like protein. | FeS assembly protein SufD. | 0.988 |
NifU | SufS | RMCT_3161 | RMCT_3160 | Nitrogen fixation-like protein. | Cysteine desulfurase csd; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | 0.998 |
NifU | YurY | RMCT_3161 | RMCT_3159 | Nitrogen fixation-like protein. | FeS assembly ATPase SufC. | 0.994 |
NifU | egtE | RMCT_3161 | RMCT_0074 | Nitrogen fixation-like protein. | Pyridoxal-phosphate-dependent transferase; Probably catalyzes the conversion of hercynylcysteine sulfoxide to ergothioneine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. EgtE subfamily. | 0.949 |
RMCT_0010 | NifU | RMCT_0010 | RMCT_3161 | Aminotransferase. | Nitrogen fixation-like protein. | 0.958 |
RMCT_0010 | RMCT_3157 | RMCT_0010 | RMCT_3157 | Aminotransferase. | FeS assembly protein SufB. | 0.871 |
RMCT_0010 | RMCT_3162 | RMCT_0010 | RMCT_3162 | Aminotransferase. | Metal-sulfur cluster biosynthetic protein. | 0.487 |
RMCT_0010 | SufD | RMCT_0010 | RMCT_3158 | Aminotransferase. | FeS assembly protein SufD. | 0.840 |
RMCT_0010 | YurY | RMCT_0010 | RMCT_3159 | Aminotransferase. | FeS assembly ATPase SufC. | 0.880 |
RMCT_3153 | NifU | RMCT_3153 | RMCT_3161 | Antibiotic ABC transporter membrane protein. | Nitrogen fixation-like protein. | 0.705 |
RMCT_3153 | RMCT_3155 | RMCT_3153 | RMCT_3155 | Antibiotic ABC transporter membrane protein. | Integral membrane protein. | 0.927 |
RMCT_3153 | RMCT_3156 | RMCT_3153 | RMCT_3156 | Antibiotic ABC transporter membrane protein. | Transcriptional regulator. | 0.785 |
RMCT_3153 | RMCT_3157 | RMCT_3153 | RMCT_3157 | Antibiotic ABC transporter membrane protein. | FeS assembly protein SufB. | 0.735 |
RMCT_3153 | RMCT_3162 | RMCT_3153 | RMCT_3162 | Antibiotic ABC transporter membrane protein. | Metal-sulfur cluster biosynthetic protein. | 0.705 |
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