Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DhaA_2Haloalkane dehalogenase. (275 aa)    
Predicted Functional Partners:
AdhB
Alcohol dehydrogenase.
    
 0.918
XylB_2
Alcohol dehydrogenase.
    
 0.918
Adh_2
Alcohol dehydrogenase adhA.
   
 0.911
Adh_1
Alcohol dehydrogenase GroES domain-containing protein.
   
 0.911
RMCT_2088
Hypothetical protein.
 
 
 0.725
PpsA_2
Beta-ketoacyl synthase.
  
 0.587
Pks2
Polyketide synthase pks5.
  
 0.580
FabG_13
Short chain dehydrogenase.
  
 0.546
FabG_3
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  0.545
Acr1_2
Dehydrogenase.
 
  0.541
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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