STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DacB_4D-alanyl-D-alanine carboxypeptidase. (451 aa)    
Predicted Functional Partners:
RMCT_3302
Hypothetical protein.
  
  
 0.985
DacB_1
Penicillin-binding protein dacB1; Belongs to the peptidase S11 family.
    
 0.981
DacB_3
D-alanyl-D-alanine carboxypeptidase dacB2; Belongs to the peptidase S11 family.
    
 0.981
DacB_2
D-alanyl-D-alanine carboxypeptidase dacB2; Belongs to the peptidase S11 family.
    
 0.946
tilS
Cell cycle protein mesJ; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
 
   
 0.943
Hpt
Hypoxanthine-guanine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
     
 0.848
Pon1
Bifunctional membrane-associated penicillin-binding protein 1A/1B ponA2 : penicillin-insensitive transglycosylase + penicillin-sensitive transpeptidase.
 
  
 0.799
PbpA_1
Penicillin-binding protein pbpA.
      
 0.687
PbpD
Penicillin-binding protein.
     
 0.686
PbpA_2
Penicillin-binding protein.
  
   
 0.685
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.