Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| HrdB | RMCT_3786 | RMCT_0697 | RMCT_3786 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Deaminase-reductase domain-containing protein. | 0.451 |
| HrdB | RhaR | RMCT_0697 | RMCT_1305 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | AraC family transcriptional regulator. | 0.795 |
| HrdB | YpdC | RMCT_0697 | RMCT_3330 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. | 0.542 |
| HrdB | YyaP_2 | RMCT_0697 | RMCT_3785 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Deaminase-reductase domain-containing protein. | 0.451 |
| HrdB | lexA | RMCT_0697 | RMCT_0705 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.462 |
| RMCT_1758 | RMCT_1975 | RMCT_1758 | RMCT_1975 | Glyoxalase family protein. | DNA-binding domain-containing protein, AraC-type. | 0.482 |
| RMCT_1758 | YpdC | RMCT_1758 | RMCT_3330 | Glyoxalase family protein. | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. | 0.523 |
| RMCT_1975 | RMCT_1758 | RMCT_1975 | RMCT_1758 | DNA-binding domain-containing protein, AraC-type. | Glyoxalase family protein. | 0.482 |
| RMCT_1975 | RMCT_1976 | RMCT_1975 | RMCT_1976 | DNA-binding domain-containing protein, AraC-type. | Glyoxalase/bleomycin resistance protein/dioxygenase. | 0.825 |
| RMCT_1975 | RhaR | RMCT_1975 | RMCT_1305 | DNA-binding domain-containing protein, AraC-type. | AraC family transcriptional regulator. | 0.515 |
| RMCT_1975 | YpdC | RMCT_1975 | RMCT_3330 | DNA-binding domain-containing protein, AraC-type. | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. | 0.542 |
| RMCT_1976 | RMCT_1975 | RMCT_1976 | RMCT_1975 | Glyoxalase/bleomycin resistance protein/dioxygenase. | DNA-binding domain-containing protein, AraC-type. | 0.825 |
| RMCT_1976 | YpdC | RMCT_1976 | RMCT_3330 | Glyoxalase/bleomycin resistance protein/dioxygenase. | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. | 0.529 |
| RMCT_3786 | HrdB | RMCT_3786 | RMCT_0697 | Deaminase-reductase domain-containing protein. | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.451 |
| RMCT_3786 | YpdC | RMCT_3786 | RMCT_3330 | Deaminase-reductase domain-containing protein. | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. | 0.551 |
| RMCT_3786 | YyaP_2 | RMCT_3786 | RMCT_3785 | Deaminase-reductase domain-containing protein. | Deaminase-reductase domain-containing protein. | 0.962 |
| RMCT_3786 | sigA | RMCT_3786 | RMCT_0691 | Deaminase-reductase domain-containing protein. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.451 |
| RhaR | HrdB | RMCT_1305 | RMCT_0697 | AraC family transcriptional regulator. | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.795 |
| RhaR | RMCT_1975 | RMCT_1305 | RMCT_1975 | AraC family transcriptional regulator. | DNA-binding domain-containing protein, AraC-type. | 0.515 |
| RhaR | YpdC | RMCT_1305 | RMCT_3330 | AraC family transcriptional regulator. | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. | 0.616 |
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