Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YpdCTranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (331 aa)    
Predicted Functional Partners:
YbfF
Hydrolase.
  
    0.634
RhaR
AraC family transcriptional regulator.
 
  
 0.626
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
 
 0.599
RMCT_1975
DNA-binding domain-containing protein, AraC-type.
 
 
 0.549
RMCT_4094
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.521
RhaS_1
Transcriptional regulator.
 
 
 0.507
RMCT_2532
AraC family transcriptional regulator.
 
 
 0.506
RMCT_2560
AraC family transcriptional regulator.
 
 
 0.506
RMCT_1976
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.498
RMCT_1758
Glyoxalase family protein.
 
    0.492
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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