Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_3333Conserved membrane protein. (272 aa)    
Predicted Functional Partners:
RMCT_3332
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.799
RMCT_2291
Protein of unknown function.
   
    0.688
MutY
Adenine glycosylase mutY.
       0.680
lpqB
Lipoprotein LpqB.
  
     0.645
RMCT_4667
Cutinase.
 
    0.558
RMCT_3585
Pyrrolo-quinoline quinone.
 
   
 0.555
EthR_7
TetR family transcriptional regulator.
 
    0.554
RMCT_0063
Hypothetical protein.
  
     0.524
RMCT_1907
MCE associated protein.
 
   
 0.511
RMCT_2644
Putative uncharacterized protein.
  
     0.501
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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