Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DegQ | EccA1_1 | RMCT_1580 | RMCT_1055 | Trypsin-like serine protease with C-terminal PDZ domain. | Type VII secretion AAA-ATPase EccA. | 0.618 |
| DegQ | EccA1_2 | RMCT_1580 | RMCT_4072 | Trypsin-like serine protease with C-terminal PDZ domain. | ATPase central domain-containing protein. | 0.618 |
| DegQ | FtsH2 | RMCT_1580 | RMCT_0334 | Trypsin-like serine protease with C-terminal PDZ domain. | ATPase central domain-containing protein; Belongs to the AAA ATPase family. | 0.618 |
| DegQ | FtsH3 | RMCT_1580 | RMCT_2694 | Trypsin-like serine protease with C-terminal PDZ domain. | ATPase; Belongs to the AAA ATPase family. | 0.618 |
| DegQ | Mec | RMCT_1580 | RMCT_2193 | Trypsin-like serine protease with C-terminal PDZ domain. | Mov34/MPN/PAD-1 family protein. | 0.707 |
| DegQ | RMCT_3355 | RMCT_1580 | RMCT_3355 | Trypsin-like serine protease with C-terminal PDZ domain. | 20S proteasome, A and B subunits. | 0.628 |
| DegQ | arc | RMCT_1580 | RMCT_4326 | Trypsin-like serine protease with C-terminal PDZ domain. | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.759 |
| DegQ | glpK | RMCT_1580 | RMCT_0079 | Trypsin-like serine protease with C-terminal PDZ domain. | Glycerol kinase GlpK; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.725 |
| EccA1_1 | DegQ | RMCT_1055 | RMCT_1580 | Type VII secretion AAA-ATPase EccA. | Trypsin-like serine protease with C-terminal PDZ domain. | 0.618 |
| EccA1_1 | HhoB_2 | RMCT_1055 | RMCT_0045 | Type VII secretion AAA-ATPase EccA. | Trypsin-like serine protease with C-terminal PDZ domain. | 0.664 |
| EccA1_1 | Mec | RMCT_1055 | RMCT_2193 | Type VII secretion AAA-ATPase EccA. | Mov34/MPN/PAD-1 family protein. | 0.741 |
| EccA1_1 | RMCT_0109 | RMCT_1055 | RMCT_0109 | Type VII secretion AAA-ATPase EccA. | Membrane-associated serine protease. | 0.618 |
| EccA1_1 | RMCT_3355 | RMCT_1055 | RMCT_3355 | Type VII secretion AAA-ATPase EccA. | 20S proteasome, A and B subunits. | 0.736 |
| EccA1_1 | arc | RMCT_1055 | RMCT_4326 | Type VII secretion AAA-ATPase EccA. | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.716 |
| EccA1_1 | glpK | RMCT_1055 | RMCT_0079 | Type VII secretion AAA-ATPase EccA. | Glycerol kinase GlpK; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.740 |
| EccA1_2 | DegQ | RMCT_4072 | RMCT_1580 | ATPase central domain-containing protein. | Trypsin-like serine protease with C-terminal PDZ domain. | 0.618 |
| EccA1_2 | HhoB_2 | RMCT_4072 | RMCT_0045 | ATPase central domain-containing protein. | Trypsin-like serine protease with C-terminal PDZ domain. | 0.618 |
| EccA1_2 | Mec | RMCT_4072 | RMCT_2193 | ATPase central domain-containing protein. | Mov34/MPN/PAD-1 family protein. | 0.707 |
| EccA1_2 | RMCT_0109 | RMCT_4072 | RMCT_0109 | ATPase central domain-containing protein. | Membrane-associated serine protease. | 0.618 |
| EccA1_2 | RMCT_3355 | RMCT_4072 | RMCT_3355 | ATPase central domain-containing protein. | 20S proteasome, A and B subunits. | 0.736 |
page 1 of 5