STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_3403acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. (550 aa)    
Predicted Functional Partners:
Cyp125
Cytochrome P450.
 
 0.954
RMCT_0297
Cytochrome P450.
 
 0.953
RMCT_1872
Cytochrome P450 monooxygenase.
 
 0.952
RMCT_1928
Cytochrome P450.
  
 0.945
FadE26
acyl-CoA dehydrogenase fadE26.
 
 
 0.938
RMCT_2374
isovaleryl-CoA dehydrogenase.
 
 
 0.929
RMCT_1920
acyl-CoA dehydrogenase fadE27.
 
 
 0.926
CaiA_2
Short/branched chain specific acyl-CoA dehydrogenase.
  
 
 0.913
Frc_17
alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.
    
 0.908
Pks2
Polyketide synthase pks5.
  
 0.908
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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