Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RMCT_3405acyl-CoA dehydrogenase. (347 aa)    
Predicted Functional Partners:
BbsG_5
acyl-CoA dehydrogenase.
  
 0.950
RMCT_3402
Amidohydrolase.
 
     0.927
RMCT_3404
Amidohydrolase.
 
    0.914
RMCT_3403
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
  
 0.849
EchA8_12
enoyl-CoA hydratase.
  
 0.840
RMCT_0989
acetyl-CoA acetyltransferase.
 
 0.809
FadJ
3-hydroxyacyl-CoA dehydrogenase.
  
 0.787
MhpC
Alpha/beta hydrolase.
 
  0.780
BbsG_6
acyl-CoA dehydrogenase.
 
     0.757
Oxc
Thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
 
 0.755
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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