Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCT_3415Putative uncharacterized protein. (363 aa)    
Predicted Functional Partners:
RMCT_3414
Metal-dependent hydrolase.
 
     0.960
RMCT_3417
Transcriptional regulator, TetR family.
 
     0.896
RMCT_1873
Transcriptional regulator.
 
     0.814
HapE_4
Monooxygenase.
       0.773
RMCT_1940
Hypothetical protein.
  
     0.691
RMCT_1938
Sulfotransferase family protein.
  
     0.663
KdgR_3
Transcriptional regulator.
  
     0.620
Ksi_1
Nuclear transport factor 2.
  
     0.473
RMCT_1721
acyl-CoA dehydrogenase.
  
     0.455
RMCT_1665
Integral membrane protein.
  
     0.426
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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