Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_3448Uncharacterized protein. (116 aa)    
Predicted Functional Partners:
RMCT_3449
Putative uncharacterized protein.
       0.784
KduD_1
Oxidoreductase.
  
 
 0.622
RMCT_3447
Putative uncharacterized protein.
  
    0.538
YdaD_1
Short-chain dehydrogenase/reductase SDR.
  
 
 0.529
RMCT_0320
Putative uncharacterized protein.
  
  
 0.481
RMCT_2433
Hypothetical protein.
  
  
 0.481
RMCT_2519
Putative uncharacterized protein.
  
  
 0.481
RMCT_3956
Putative uncharacterized protein.
  
  
 0.481
RluA
Pseudouridine synthase.
  
    0.472
GlpD_1
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.466
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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