Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KduD_1Oxidoreductase. (251 aa)    
Predicted Functional Partners:
KasA_2
Fatty acid synthase.
  
 0.707
YdaD_1
Short-chain dehydrogenase/reductase SDR.
 
    
0.695
HsdA_2
3-alpha-hydroxysteroid dehydrogenase.
  
     0.681
BudC
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.681
RMCT_3448
Uncharacterized protein.
  
 
 0.622
KatA
Catalase.
  
 0.599
KatE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.599
Lvr_2
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.589
RMCT_3370
Acyl dehydratase.
  
 0.555
FadJ
3-hydroxyacyl-CoA dehydrogenase.
  
 0.552
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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